I found two things that help with controlling the bike at low speeds, in that somewhat troublesome 1000-2000 rpm area:
1. eliminate gas cable play --> this allows for more predictability on the throttle response
2. mild use the rear brake (I have an '08, so no linked brakes), which pre-loads the drive train and helps with the weight transfer in slow, tight turns.
A better solution has been the PCV, but as you say: the vehicle should work glitch-free from factory.