So following all the helpful advice gained from this thread it would seem this is what I need to do.
1) Have my C14's ECU reprogrammed to accept the new active & passive fobs.
2) Verify fob work with C14.
3) Have the new Key blanks cut.
4) Verify new keys work & install them in their respective Fobs.
5) Disable battery on active fob & stash in safe place at home in original packaging.
6) Hide passive fob under the seat. (good use for the little storage space on the bottom of my sargeant seat)
7) Drill a hole in the key I retrieved from the broken / suicidal fob.
8] Attach this and all other bike related keys (trunk, helmet lock, etc) to a ring seperate from the currently active fob. these key are to be used as needed.
9) Place the currently active fob deep within a pocket & do not remove while using my C14.
10) Rest assured I will never be stranded due to a KIPASS / FOB issue.