The tight wound coils will always compress first as they are the softer, therefore if they are at the top, all of the open coils will be accelerating up/down all the time. If the tight coils are at the bottom then only they will be accelerating until fully compressed. Also, having the tight coils at the bottom lowers the centre of gravity of the spring.
In use I don't think it makes a noticable difference. If you want a real difference replace them with heavier straight wound springs, then thicker oil, then cartridge emulators, and finally a fork brace.
Regards, Russell