Great. But just to be sure it was done right, remove the batteries from the active fobs and check that the passive function of all 4 work.
Yeah, hate to be non-trusting, but that is a good idea. You don't want to be stranded one day. They do have to program both the active AND passive RFID separately in the larger FOBs. I could easily see them doing only the active RFID portion.
Also, don't forget to order the correct metal key (A or B) and have that cut, to put inside the FOB, or you will be in for a surprise when you can't open the gas tank or panniers