I had this EXACT thing happen to me. I changed my tires right before I left for Alaska. After putting my bike back together I had the mushy brake syndrome. I took it all apart to find out what the cause of the mush was. Couldn't find anything. So I rode. The brakes were fine after a pump.
I fought this all the way through Canada and now down into the states. It's now unbearable! I really need a fix. IF I find a dealer willing to dive in, I'll give it a go. But I will likely have to wait until I get back.
Well In Eugene, I replaced the front pads because the pulsation and feeling in the front was un-nerving. After replacing the pads the pulsing was still there, but the front wheel won't turn freely. It hits on the warpage. I've tried a couple of small dealers and they don't want anything to do with it.
I'm now in Redding, Ca. and considering ordering new rotors from Galfer or comparable. I still feel like this is a product malfunction. Me buying new rotors that may or may not fix the problem is money out of my pocket. My brakes are SH!T, but I'm limping!