Alright, ya gotta step back and look at the engineering design, and it all will make sense. First off, the oring in the driveshaft rarely fails. I've not seen or heard of it. There is, however, a matching oring on the final drive input shaft; it's way back behind the splines and just in front of the pinion seal. That oring gets cut in two quite easily when you remove the final drive and replace it. The orings are there to seal the self - lubing slip joint. If eather seal fails, then the leak occurs. There may also be an actual pinion seal leak, but I don't think that's anywhere near as likely as the Oring on the input shaft being the problem.
Now on the 4 bolts, and axle misalignement. That' easy, too. look at the entire design. The axle hole on the brake side of the swingarm is fixed. the final drive side can be rotated a few degees when the 4 bolts are loose. So obviously it's really easy to put the final drive on and have it slightly misaligned if you don't have the axle installed to center it with the other side of the swingarm. Easy, install the axle, then tighten the 4 bolts.
From a mechanics perspective, I can tell you that whenever working with an assembly that has multiple bolts, all the bolts need to be started befor any are tightened. This is no different. HTH, Steve